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ADAPTx
[commercial] Automated multivariable system identification and time series analysis software.

Advanced Source Code
Source code for signal processing, image processing, and biometric recognition.

ARfit: Fitting Multivariate Autoregressive Models
Offers functions for estimating parameters of multivariate autoregressive (AR) models, diagnostic checking of fitted models, and analyzing eigenmodes.

ARMASA Toolbox
[free] The power spectrum containing only the significant details is calculated from an estimated time series model. The model order and type are determined automatically, using statistical selection criteria.

Audio Filtering Toolkit
A collection of functions for designing and analyzing industry standard digital audio filters.

Bayes Net Toolbox
Software for MATLAB 5.

Biomedical Signal Analysis Software
Software package of various methods for biosignal analysis. Can be adapted for the analysis of time-variant or event-related biosignals.

Blind Watchmaker IFS Applet
Provides an interface for visually evolving a "genotype" vector of floating-point values based on a displayable "phenotype".

The Bootstrap Toolbox
[free] Functions for resampling, hypothesis testing, and confidence interval estimation.

BrainStorm
A toolbox dedicated to Magnetoencephalography (MEG) and Electroencephalography (EEG) data visualization and processing.

BSTEX
[commercial] Equation Viewer. The equations typed for evaluation are automatically transformed to graphical Tex presentation.

Camera Calibration Toolbox
Utilizes a new bias correction procedure for circular control points and a nonrecursive method for reversing the distortion model.

The Cerveau Cafe
User submitted Matlab benchmarks. Lists information comparing different types of hardware with program performance.

Chemometrics Toolbox
Provides specialized functions for calibration, including quantitative and qualitative analysis. Includes ordering details.

COMSOL Norge
Scandinavian distributor of MATLAB, FEMLAB and Maple.

Constell, Inc
A toolbox designed for analysis of GPS, GLONASS, and user defined constellations for navigation or communcications.

Control Tutorials for MATLAB
Covering the analysis and design of automatic control systems.

Cornell Multitask Toolbox
Provides a set of development programming tools.

Cross Recurrence Plot Toolbox
Contains routines for computing recurrence plots and related problems. A command-line application of the programmes is also possible.

CSIRO matlab/netCDF interface
Used in a to retrieve data from, and information about, existing netCDF files.

Data Visualization Toolbox
Implementing the analytical and graphical methods presented in William S. Cleveland's Visualizing Data.

DDE-BIFTOOL
A package for bifurcation analysis of delay differential equations.

Design and Analysis of Computer Experiments
Toolbox for working with kriging approximations to computer models. Includes zip download and reference file in pdf format.

Dutchroll Blockset for Simulink
[free] Provides several useful general-purpose Simulink blocks, such as signal generators, gains, switches, and rotation blocks.

EasyKrig2.0
The GLOBEC Kriging software package.

Easyspec
A small spectrum-analyzer like plotter.

EIGIFP
Computes a few (algebraiclly) smallest or largest eigenvalues of large symmetric matrices.

EigTool
[free] A GUI (Graphical User Interface) that integrates MATLAB's eigs routine (ARPACK) for finding a few eigenvalues of a large sparse matrix with the (now obsolete) Pseudospectra GUI for computing pseudospectra of matrices.

Engineering Vibration Toolbox
Including single degree of freedom response, response spectrum, finite elements, numerical integration, modal analysis and phase plane analysis.

epsTk
Provides, via a set of .m functions, a toolkit to create powerful encapsulated postscript (.eps) graphs. Most 2D scientific graphics functions are written. The generated .eps-files are very small and can be imported into other documents without loss of quality.

Equation Viewer for MATLAB
[commercial] Equations in the workspace are automatically translated to a pretty print form and displayed on a special figure.

Evolutionary Algorithms for MATLAB
A list of available toolboxes for genetic algorithms and genetic programming.

Factor Analysis Toolbox
The Factor Analysis Toolbox provides a family of specialized MATLAB functions for factor analysis techniques. It is designed to help you learn the principles of target factor analysis and to provide the capabilities necessary for tackling real research and modelling problems.

FastICA for MATLAB
Implements the fast fixed-point algorithm for independent component analysis and projection pursuit.

FEMLAB - Multiphysics in MATLAB
[commercial] A powerful interactive environment for modeling and solving scientific and engineering problems involving partial differential equations.

Flight Dynamics and Control Toolbox
A Matlab/Simulink toolbox for aircraft dynamics research and flight control system design. Features a detailed flight model, autopilot simulation, and user manual.

FMM Toolbox for MATLAB
Provides solvers for a core set of partial differential equations.

GABLE: A MATLAB Geometric Algebra Tutorial
A tutorial for learning Geometric Algebra, aimed at the sophomore college level.

Genetic and Evolutionary Algorithm Toolbox
[commercial]

Global Optimization by Multilevel Coordinate Search
MCS is a MATLAB program for bound constrained global optimization using function values only, based on a multilevel coordinate search that balances global and local search.

GloptiPoly
A MATLAB/SeDuMi add-on to build and solve convex conic relaxations of non-convex global polynomial optimization problems.

GPS Signal Simulation Toolbox
[commercial] A set of GPS signal simulation, test, and analysis tools.

Gradient Vector Flow for MATLAB
A variation on active contours, computer-generated curves that move within images to find object boundaries.

The Gravitational Radiation Analysis and Simulation Package
Includes the Gravitational Radiation Toolbox, which provides a MATLAB interface to both GRASP and the Frame Library.

Growing Cell Structure Visualisation Toolbox
[free] Implements the system described in "Visualisation of biomedical datasets by use of growing cell structure networks: a novel diagnostic classification technique" by Walker AJ, Cross SS, Harrison RF.

Hidden Markov Model (HMM) Toolbox
Written by Kevin Murphy [free].

h2m
Functions for the EM estimation of mixtures and hidden Markov models.

Holo
A program which allows the user to visualize the effect of complex maps, especially, but not exclusively, those which are holomorphic.

HPLOT - Signal Data Visualization and Processing Tool for MATLAB
HPLOT is a dynamic gui tool made for rapid visualization and signal treatment, filtering, FFT and other mathematical operations. By Claudio Gambelli http://www.gambelli.org

HUTear Matlab Toolbox version 2.0
A MATLAB toolbox for auditory modeling.

Hypercomplex Numerical Computing Software
Commutative hypercomplex number systems, hypercomplex numerical computing software and applications. A MATLAB toolbox.

ICALAB Toolboxes
ICALAB for Signal Processing and ICALAB for Image Processing are two independent packages for MATLAB that implement a number of efficient algorithms for ICA (independent component analysis).

Image Reconstruction Toolbox
M-files for several algorithms for tomographic image reconstruction. Included in collection is a NUFFT MATLAB toolbox that performs fast and accurate nonuniform FFT computations.

JMatLink
[free] Connects Java and MATLAB. Native methods make it possible to use MATLAB's computational engine inside your own java applications, applets and servlets.

KFtools for MATLAB
Some simple, fast image processing functions for MATLAB.

Kriging Toolbox
Matlab based toolbox written by Caroline Lafleur and Yves Gratton, INRS-Oceanologie, Universite du Quebec Rimouski.

LMAM-OLMAM Toolbox
A set of Matlab routines that implement the Levenberg Marquardt with Adaptive Momentum (LMAM) and the Optimized Levenberg Marquardt with Adaptive Momentum (OLMAM) algorithms for training feedforward neural networks.

L3NAV Systems
Provider of GPS and Kalman Filtering Toolboxes for MATLAB.

LOBPCG Method
Locally Optimal Block Preconditioned Conjugate Gradient.

MATDS
A MATLAB-based program for dynamical system investigation. Current version allows to compute trajectories, equilibria, Poincare map, Lyapunov exponents and vector field visualization for ordinary differential equation systems.

Math Forum
Users of the software share tips and advice.

Mathematical Exploration with MATLAB
By Ke Chen, Peter Giblin and Alan Irving (CUP, 1999). M-files and sample solutions.

Mathtools.net
MATLAB Portal with links to toolboxes and other resources. Requires Javascript; free registration.

MATLAB Automated Testing Tool
Software to generate test matrices, execute simulations of a particular superblock, capture the simulation output, and support analysis of the output.

MATLAB Depot
A collection of M-files for linear algebra maintained by Michael Tsatsomeros at Washington State University.

A Matlab Differentiation Matrix Suite
Provides functions for solving differential equations by the spectral collocation method.

Matlab Distributed Computation Tutorial
Describes scenarios for monitoring, pipelines and parallel processing. PDF, HTML, source code.

MATLAB FAQ
Frequently asked questions in comp.soft-sys.matlab.

MATLAB OPTIMIZATION - TOMLAB
The TOMLAB Optimization Environment is a powerful optimization platform for solving applied optimization problems in MATLAB. TOMLAB provides a wide range of features, tools and services for your solution process.

Matlab Summary and Tutorial
Provided by the University of Florida.

The Matrix Computation Toolbox
[free] A collection of MATLAB M-files containing functions for constructing test matrices, computing matrix factorizations, visualizing matrices, and carrying out direct search optimization.